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%
%                                                       Example IS Template
%
% \documentclass{woosterthesis} must be at the beginning of every IS. Options are the same as
% for the report class with some additional options: abstractonly, acs, alltt, apa, blacklinks, chicago,
% code, colophon, dropcaps, euler, foreignlanguage, gauss, index, kaukecopyright, lshortwooster, maple, mla, palatino, picins,tikz,
% verbatim, wblack, and woostercopyright. The kaukecopyright option will put the arch symbol with the word mark on the
% copyright page. The woosterthesis class is based on the report class. One thing to note is that
% the ``%'' symbol comments out all characters that follow it on the line.
%
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%
% Checked on 8/26/22 and compiles with no fatal errors. Users must have the latest version of the TeXLive software and
% have installed all available packages from CTAN to ensure this thesis class compiles with no fatal errors. Also, you must
% run pdfLaTex, Biber, MakeIndex, padfLaTeX, pdfLaTeX to get all the numbering and references resolved. This is the
% first year the template uses Biber for references.
%
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% use this declaration for a draft  version of your IS
\documentclass[palatino,code,picins,tikz,kaukecopyright,openright,lshortwooster,dropcaps,verbatim,index,oneside,euler,nature]{woosterthesis}
\ExecuteBibliographyOptions{intitle=true}
% Note that you can specify the acs option to use the American Chemical Society citation format, apa option to use the American
% Psychological Association citation format, chicago option to use the Chicago citation format, mla option to use the Modern Language
% Association citation format, wblack option for a grayscale Wooster "W" on the cover, and scottie option for a grayscale Scottie Mascot
% on the cover. See exampleis_manual.pdf for an explanation of all the options.
%
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%
% use this declaration for the print version of your IS
%\documentclass[12pt,code,palatino,picins,blacklinks,kaukecopyright,openright,oneside,final]{woosterthesis} % probably what most students would use
%
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%

% use this declaration for the PDF version of your IS
%\documentclass[12pt,code,palatino,picins,kaukecopyright,openright,oneside,final]{woosterthesis}
%
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%
%                                                       Load Packages
%
%   To load packages in addition to the ones that are loaded by default, please place your
%   usepackage commands in the packages.tex file in the styles folder.
%
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\input{styles/packages}

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%
%                                                       Load Personal commands
%                                                                    
%  There will be certain commands that you use frequently in the thesis. You can give these
%  commands new names which are easier for you to remember. You can also combine several
%  commands into a new command of your own. See The LaTeX Companion or Guide to LaTeX
%  for examples on defining your own commands. These are commands that I defined to cut
%  down on typing. You can enter your commands in the personal.tex file in the styles folder.
%
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\input{styles/personal}

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%
%                                                       Load Theorem formatting information
%
%  If you need to define an new theorem style or want to see what theorem like environments 
%  are available please look at the theorems.tex file in the styles folder.
%
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\input{styles/theorems}

\setcounter{secnumdepth}{5}% controls the numbering of sections
\setcounter{tocdepth}{6}% controls the number of levels in the Contents

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%
%  This is where one enters their bibilography file name.
%
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\addbibresource{WaveLab-Bibfile_2026-08.bib}

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%  This is where one enters the information about the thesis.
%
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\title{Senior I.S.\ thesis in the Wave Lab}

\thesistype{Independent Study Thesis} % you should make this Independent Study Thesis
\author{YOUR NAME}
%\presentdegrees{Ph.D.} % you should comment this line
\degreetoobtain{~\\[3mm]Bachelor of Arts (B.A.) in Physics\\[3mm]}
\presentschool{The College of Wooster}
\academicprogram{Department of Physics}
\gradyear{~\\ 2027}
\advisor{Advised by}{
    \begin{center} \hspace*{23mm} \underline{\hspace{55mm}}\\ 
    \hspace*{25mm} Dr.\ Niklas Manz
    \end{center}}
\reader{Second reader}{
    \begin{center} \hspace*{23mm} \underline{\hspace{55mm}}\\ 
    \hspace*{25mm} Dr.\ XXXXXXXX
    \end{center}}
    
\copyrighted                   
\makeindex % comment this line if you do not have an index

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%
%  This is where the commands for the document begin. All \LaTeX{} documents must have a
%  \begin{document} text .... \end{document} structure.
%
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\begin{document}

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%
%  The front matter includes acknowledgments, dedications, vitas, list of tables, list of figures,
%  copyright, abstract, title page, and contents.
%
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\frontmatter
\ifthenelse{\boolean{abstractonly}}{
  % Do nothing — skip front matter
}{
\maketitle
\ClearShipoutPicture
\clearpage\thispagestyle{empty}\null\clearpage

\disscopyright 
}

              
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\begin{abstract}
\lipsum[10]

\end{abstract}
              
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%\dedication{This work is dedicated to the future generations of Wooster students.}                                                                                     
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\begin{acknowl}  
I would like to acknowledge Prof. Lowell Boone in the Physics Department for his suggestions and code.
\end{acknowl}

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%\begin{vita} 
% You talk about yourself and how you got to where you are now. There is a structured form for the Vita that can be used if you want, but I don't encourage it.

%%%This is for any publications you might have.%%%%%

% \begin{publist}  
% \pubitem{\quad}
% \pubitem{\quad}
% \end{publist} 

% \begin{fieldsstudy} 
%     \majorfield{Major}
% 	\minorfield{Minor}
%     \specialization{Area of IS research}
%     %\begin{studieslist}
%    %\studyitem{Abstract Algebra}{Hampton}
%    %\end{studieslist}
%   \end{fieldsstudy}
% \end{vita}

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\cleardoublepage
\phantomsection
\addcontentsline{toc}{chapter}{Contents}

\tableofcontents
\listoffigures %Use if you have a list of figures.
\listoftables%Use if you have a list of tables.
\lstlistoflistings% Use if you are using the code option

\input{chapters/variables}
\addcontentsline{toc}{chapter}{List of Variables}

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\mainmatter

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%
%                                                       Thesis Chapters
%
% This is where the main text of the thesis goes. I have written this template assuming that
% each chapter is a separate file. You do not have to do this but it makes things easier to find
% for editing. You can use the sample chapters to help you figure out how to type things into
% your thesis. To include a chapter just use the \include{chaptername} command. Chapters are
% included in the order listed.
%
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\input{chapters/introduction}
\input{chapters/background}

\input{chapters/theory}
\input{chapters/methods}
\input{chapters/results}

\input{chapters/conclusion}
\input{chapters/future}

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%
%  This section starts the back matter. The back matter includes appendices, indicies, and the
%  bibliography
%
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\backmatter

\input{appendices/appendix_bibtest}
\input{appendices/appendix_animation}

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%
%  We used BibLaTeX and Biber to generate a Bibliography.
%
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%\nocite{*} % This command forces all the bibliography references to be printed -- not just 
              % those that were explicitly cited in the text.  If you comment this out, the bibliography
              % will only include cited references.
\printbibliography[title=References,heading=bibintoc]% load our Bibliography file

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% \ifthenelse{\boolean{index}}{
% \cleardoublepage
% \phantomsection
% \addcontentsline{toc}{chapter}{Index}
% \printindex}{}

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%
%                                                                Colophon
%
%  A Colophon is a section of a printed document that acknowledges the designers and printers of the work.
% The colophon also includes information about the fonts and paper used in the printing. It is not required 
% for your IS and can be commented out.
%
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\ifthenelse{\boolean{colophon}}{
\begin{colophon}
This Independent Study was designed by Dr. Jon Breitenbucher.\newline
It was edited and set into type in Wooster, Ohio,\newline
using the \ifthenelse{\boolean{xetex}}{\XeTeX\ typesetting system designed by Jonathan Kew}{\LaTeX\ typesetting system designed by Leslie Lamport}\newline
and based on the original \TeX\ system of Donald Knuth.\newline

The text face is Palatino, designed by Hermann Zapf in 1948,\newline
and initially released in 1949 by the Stempel foundry and later\newline
by other companies, most notably the Mergenthaler Linotype\newline
Company. Palatino is optimised for legitibility with open counters,\newline
balanced proportions, moderate stroke contrast and flared serifs.
\end{colophon}}{}
\clearpage\thispagestyle{empty}\null\clearpage
\end{document}